python 2.7 + RHEL 6.5 + Shapely-1.4.4:MemoryError
我在RHEL 6.5上的两个部署中遇到了这个问题。找不到对谷歌搜索任何答案python 2.7 + RHEL 6.5 + Shapely-1.4.4:MemoryError
基本安装软件包
(nout)$ sudo rpm -qa | grep geos
geos-devel-3.3.2-1.el6.x86_64
geos-3.3.2-1.el6.x86_64
geos-python-3.3.2-1.el6.x86_64
匀称安装
(nout)$ easy_install -Z Shapely-1.4.4.tar.gz
Processing Shapely-1.4.4.tar.gz
Writing /tmp/easy_install-iLylTY/Shapely-1.4.4/setup.cfg
Running Shapely-1.4.4/setup.py -q bdist_egg --dist-dir /tmp/easy_install-iLylTY/Shapely-1.4.4/egg-dist-tmp-xFmed4
Numpy or Cython not available, shapely.vectorized submodule not being built.
shapely/speedups/_speedups.c: In function ‘__pyx_pf_7shapely_8speedups_9_speedups_2geos_linestring_from_py’:
shapely/speedups/_speedups.c:1603: warning: assignment discards qualifiers from pointer target type
shapely/speedups/_speedups.c:2087: warning: assignment discards qualifiers from pointer target type
shapely/speedups/_speedups.c:2553: warning: assignment discards qualifiers from pointer target type
shapely/speedups/_speedups.c: In function ‘__pyx_pf_7shapely_8speedups_9_speedups_4geos_linearring_from_py’:
shapely/speedups/_speedups.c:3118: warning: assignment discards qualifiers from pointer target type
shapely/speedups/_speedups.c:3127: warning: pointer targets in passing argument 3 of ‘GEOSCoordSeq_getSize_r’ differ in signedness
/usr/include/geos_c.h:321: note: expected ‘unsigned int *’ but argument is of type ‘int *’
shapely/speedups/_speedups.c:3614: warning: assignment discards qualifiers from pointer target type
shapely/speedups/_speedups.c:4158: warning: assignment discards qualifiers from pointer target type
shapely/speedups/_speedups.c: At top level:
shapely/speedups/_speedups.c:924: warning: ‘__pyx_f_7shapely_8speedups_9_speedups_get_geos_context_handle’ defined but not used
shapely/speedups/_speedups.c:1010: warning: ‘__pyx_f_7shapely_8speedups_9_speedups_geos_from_prepared’ defined but not used
zip_safe flag not set; analyzing archive contents...
shapely.geos: module references __file__
Adding Shapely 1.4.4 to easy-install.pth file
Python Shell中
(nout)$ python
Python 2.7.8 (default, Sep 12 2014, 14:39:38)
[GCC 4.4.7 20120313 (Red Hat 4.4.7-4)] on linux2
Type "help", "copyright", "credits" or "license" for more information.
>>> from shapely.geometry import Polygon, Point
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
File "/omd/nocout/nout/lib/python2.7/site-packages/Shapely-1.4.4-py2.7-linux-x86_64.egg/shapely/geometry/__init__.py", line 4, in <module>
from .base import CAP_STYLE, JOIN_STYLE
File "/omd/nocout/nout/lib/python2.7/site-packages/Shapely-1.4.4-py2.7-linux-x86_64.egg/shapely/geometry/base.py", line 9, in <module>
from shapely.coords import CoordinateSequence
File "/omd/nocout/nout/lib/python2.7/site-packages/Shapely-1.4.4-py2.7-linux-x86_64.egg/shapely/coords.py", line 8, in <module>
from shapely.geos import lgeos
File "/omd/nocout/nout/lib/python2.7/site-packages/Shapely-1.4.4-py2.7-linux-x86_64.egg/shapely/geos.py", line 194, in <module>
error_h = EXCEPTION_HANDLER_FUNCTYPE(error_handler)
MemoryError
Python Shell中
>>> from shapely.ops import transform
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
File "/omd/nocout/nout/lib/python2.7/site-packages/Shapely-1.4.4-py2.7-linux-x86_64.egg/shapely/ops.py", line 13, in <module>
from shapely.geos import lgeos
File "/omd/nocout/nout/lib/python2.7/site-packages/Shapely-1.4.4-py2.7-linux-x86_64.egg/shapely/geos.py", line 194, in <module>
error_h = EXCEPTION_HANDLER_FUNCTYPE(error_handler)
MemoryError
在调用import
MemoryError
收到
我无法理解的原因。
对于RHEL
+ selinux enabled
+ /tmp as noexec
,试图访问和执行/tmp
的任何模块都会生成一个MEMORY ERROR。
在我的情况,/tmp
是noexec
和SELinux的被实施
的/tmp
默认为defaults,noexec,nosuid,nodev
。
我设置:在看:https://bugzilla.redhat.com/show_bug.cgi?id=645193#c11
$ getsebool -a | grep httpd_tmp_exec
httpd_tmp_exec --> on
不过问题依然存在,如果我正确地理解,这是因为:https://bugzilla.redhat.com/show_bug.cgi?id=582009
The libffi library tries to write to /tmp,
which isn't allowed for the apache user in a default SELinux config
(https://bugzilla.redhat.com/show_bug.cgi?id=582009).
In this environment, importing ctypes always throws a MemoryError
所以选择httpd_tmp_exec --> on
是没有用的对我来说。在我看到def _candidate_tempdir_list()
还有,如果有envnames TMPDIR
,TEMP
,TMP
,Python将皮卡的临时位置:
我去寻找到蟒蛇LIB文件,搜索/tmp
声明,我发现tempfile.py line 147
。
要设置哪个变量?为此我去了libffi
源代码,libffi-3.0.6
。文件:src/closures.c
行290 open_temp_exec_file_env, "TMPDIR", 0
。
该TMPDIR
是被设置的候选人。
我继续带安装/opt/app/tmp
,设置export TMPDIR=/opt/app/tmp
做这一切工作正常,直到我用python idle
,当我继续与nginx + uwsgi
部署,我被同样的错误caughtup。现在我不确定为什么会发生这种情况,我认为必须是uwsgi
执行问题。所以我第一次重新安装uwsgi
,然后我修改了/location
为nginx.conf
看着:http://nginx.org/en/docs/http/ngx_http_uwsgi_module.html#uwsgi_temp_path集:uwsgi_temp_path
我重新启动所有的服务,nginx的,uwsgi。并尝试过。有效。
我也首先尝试:(安全)HACK:Python ctypes MemoryError in fcgi process from PIL library
结果是令人失望的我。